University of Hertfordshire

Dr Maria Schilstra

Publications

  1. 2008
  2. Regulation of gene regulation - smooth binding with dynamic affinity affects evolvability

    Knabe, J., Nehaniv, C. L. & Schilstra, M. 2008 IEEE Congress on Evolutionary Computation, CEC 2008. IEEE, p. 890-896

    Research output: ResearchConference contribution

  3. 2007
  4. SBML models and MathSBML

    Shapiro, B. E., Finney, A., Hucka, M., Bornstein, B., Funahashi, A., Jouraku, A., Keating, S., Le Novere, N., Matthews, J. & Schilstra, M. 2007 Introduction to Systems Biology. Choi, S. (ed.). Human Press / Springer, p. 395-421

    Research output: ResearchChapter

  5. The Essential Motif that wasn't there: Topological and Lesioning Analysis of Evolved Genetic Regulatory Networks

    Knabe, J., Nehaniv, C. L. & Schilstra, M. 2007 In: IEEE Symposium on Artificial Life, ALIFE'07. IEEE, p. 69-76

    Research output: ResearchConference contribution

  6. The NetBuilder project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks

    Wegner, K., Knabe, J., Robinson, M., Egri-Nagy, A. & Schilstra, M. 2007 In : BMC Systems Biology. 1, Suppl 1

    Research output: Research - peer-reviewArticle

  7. 2006
  8. BioModels Database: A Free, Centralized Database of Curated, Published, Quantitative Kinetic Models of Biochemical and Cellular Systems

    Le Novere, N., Bornstein, B., Broicher, A., Courtot, M., Donizelli, M., Dharuri, H., Li, L., Sauro, H., Schilstra, M., Shapiro, B. E., Snoep, J. L. & Hucka, M. 2006 In : Nucleic Acids Research. 34, Supp 1, p. D689-691

    Research output: Research - peer-reviewArticle

  9. CellML2SBML: conversion of CellML into SBML

    Schilstra, M., Li, L., Matthews, J., Finney, A., Hucka, M. & Le Novere, N. 2006 In : Bioinformatics. 22, 8, p. 1018-1020

    Research output: Research - peer-reviewArticle

  10. Evolutionary robustness of differentiation in genetic regulatory networks

    Knabe, J., Nehaniv, C. L. & Schilstra, M. 2006 In: Explorations in the Complexity of Possible Life; Procs of the 7th German Workshop on Artificial Life (GWAL7). IOS Press, p. 75-84

    Research output: ResearchConference contribution

  11. Evolving biological clocks using genetic regulatory networks

    Knabe, J., Nehaniv, C. L., Schilstra, M. & Quick, T. 2006 In: ARTIFICIAL LIFE X: PROCEEDINGS OF THE TENTH INTERNATIONAL CONFERENCE ON THE SIMULATION AND SYNTHESIS OF LIVING SYSTEMS, edited by Rocha, L.M.; Yaeger, L.S.; Bedau, M.A.; Floreano, D.; Goldstone, R.L.; Vespignani, A.. MIT Press, p. 15-21

    Research output: ResearchConference contribution

  12. 2004
  13. Design of spatially extended neural networks for specific applications

    Adams, R., te Boekhorst, R., Rust, A. G., Kaye, P. H. & Schilstra, M. 2004 Proceedings of the International Joint Conference on Neural Networks. IEEE, Vol. 4, p. 3101-3106

    Research output: ResearchConference contribution

  14. Evolving a Lingua Franca and Associated Software Infrastructure for Computational Systems Biology - the Systems Biology Markup Language (SBML) Project

    Hucka, M., Finney, A., Bornstein, B., Keating, S., Shapiro, B. E., Matthews, J., Kovitz, B. L., Schilstra, M., Funahashi, A., Doyle, J. C. & Kitano, H. 2004 In : IEE Proceedings - Systems Biology. 1, 1, p. 41-53

    Research output: Research - peer-reviewArticle

  15. 2003
  16. Evolving computational neural systems using synthetic developmental mechanisms

    Adams, R. G., Rust, A. G., Schilstra, M. & Bolouri, H. 2003 On Growth, Form and Computers. Kumar, S. & Bentley, P. J. (eds.). Elsevier, p. 353-376

    Research output: ResearchChapter

  17. 2002
  18. A Finite State Automation Model for Multi-Neuron Simulations

    Schilstra, M., Rust, A. G., Adams, R. G. & Bolouri, H. 2002 In : Neurocomputing. 44, p. 1141-1148

    Research output: Research - peer-reviewArticle

  19. A Genomic Regulatory Network for Development

    Davidson, E. H. , Rast, J. P. , Oliveri, P. , Ransick, A. , Calestani, C. , Yuh, C. H. , Minokawa, T. , Amore, G. , Hinman, V. , Arenas-Mena, C. , Otim, A. , Brown, C. T. , Livi, C. B. , Lee, P. Y. , Revilla, R. , Rust, A. G. , Pan, Z. , Schilstra, M. , Clarke, P. J. C. , Arnone, M. I. & 5 others Rowen, L., Cameron, R. A., McClay, D. R., Hood, L. & Bolouri, H. 2002 In : Science. 295, 5560, p. 1669-1678

    Research output: Research - peer-reviewArticle

  20. A provisonal regulatory gene network for specification of endomesoderm in the sea urchin embryo

    Davidson, E. H. , Rast, J. P. , Oliveri, P. , Ransick, A. , Calestani, C. , Yuh, C. H. , Minokawa, T. , Amore, G. , Hinman, V. , Arenas-Mena, C. , Otim, O. , Brown, C. T. , Livi, C. B. , Lee, P. Y. , Revilla, R. , Schilstra, M. , Clarke, P. J. C. , Rust, A. G. , Pan, Z. , Arnone, M. I. & 5 others Rowen, L., Cameron, R. A., McClay, D. R., Hood, L. & Bolouri, H. 2002 In : Developmental Biology. 246, p. 162-190

    Research output: Research - peer-reviewArticle

  21. New Computational Approaches for Analysis of cis-Regulatory Networks

    Brown, C. T., Rust, A. G., Clarke, P. J. C., Pan, Z., Schilstra, M., De Buysscher, T., Griffin, G., Wold, B. J., Cameron, R. A., Davidson, E. H. & Bolouri, H. 2002 In : Developmental Biology. 246, p. 86-102

    Research output: Research - peer-reviewArticle

  22. Replacement of Tyrosine D with Phenylalanine Affects the Normal Proton Transfer Pathways for the Reduction of P680+ in Oxygen-Evolving Photosystem II Particles from Chlamydomonas

    Jeans, C., Schilstra, M., Ray, N., Husain, S., Minagawa, J., Nugent, J. & Klug, D. R. 2002 In : Biochemistry. 41, 52, p. 1574-15761

    Research output: Research - peer-reviewArticle

  23. The Temperature Dependence of P680+ Reduction in Oxygen-Evolving Photosystem II

    Jeans, C., Schilstra, M. & Klug, D. R. 2002 In : Biochemistry. 41, 15, p. 5015-5023

    Research output: Research - peer-reviewArticle

  24. 2001
  25. Are the trapping dynamics in Photosystem II sensitive to QA redox potential?

    Barter, L., Schilstra, M., Barber, J., Durrant, J. R. & Klug, D. R. 2001 In : Journal of Photochemistry and Photobiology A: Chemistry. 142, 2-3, p. 127-132

    Research output: Research - peer-reviewArticle

  26. Relationship between Excitation Energy Transfer, Trapping, and Antenna Size in Photosystem II

    Barter, L., Bianchietti, M., Jeans, C., Schilstra, M., Hankamer, B., Diner, B. A., Barber, J., Durrant, J. R. & Klug, D. R. 2001 In : Biochemistry. 40, 13, p. 4026-4034

    Research output: Research - peer-reviewArticle

  27. 1999
  28. Similarity between electron donor side reactions in the solubilized Photosystem II–LHC II supercomplex and Photosystem-II-containing membranes

    Schilstra, M., Nield, J., Dorner, W., Hankamer, B., Carradus, M., Barter, L., Barber, J. & Klug, D. R. 1999 In : Photosynthesis Research. 60, 2-3, p. 191-198

    Research output: Research - peer-reviewArticle

  29. 1998
  30. Modulation of Quantum Yield of Primary Radical Pair Formation in Photosystem II by Site-Directed Mutagenesis Affecting Radical Cations and Anions

    Merry, S. A. P., Nixon, P. L., Barter, L., Schilstra, M., Porter, G., Barber, J., Durrant, J. R. & Klug, D. R. 1998 In : Biochemistry. 37, 50, p. 17439-17447

    Research output: Research - peer-reviewArticle

  31. Proton/Hydrogen Transfer Affects the S-State-Dependent Microsecond Phases of P680+ Reduction during Water Splitting

    Schilstra, M., Rappaport, F., Nugent, J., Barnett, C. J., Barber, J. & Klug, D. R. 1998 In : Biochemistry. 37, 11, p. 3974-3981

    Research output: Research - peer-reviewArticle

  32. 1996
  33. Mechanism of Lipoxygenase Inactivation by the Linoleic Acid Analogue Octadeca-9,12-diynoic Acid

    Schilstra, M., Nieuwenhuizen, W. F., Veldink, G. A. & Vliegenthart, J. F. G. 1996 In : Biochemistry. 35, 11, p. 3396-3401

    Research output: Research - peer-reviewArticle