Search results

  • 2024

    Phylogenomics and the rise of the angiosperms

    Zuntini, A. R., Carruthers, T., Maurin, O., Bailey, P. C., Leempoel, K., Brewer, G. E., Epitawalage, N., Françoso, E., Gallego-Paramo, B., McGinnie, C., Negrão, R., Roy, S. R., Simpson, L., Toledo Romero, E., Barber, V. M. A., Botigué, L., Clarkson, J. J., Cowan, R. S., Dodsworth, S., Johnson, M. G., & 259 othersKim, J. T., Pokorny, L., Wickett, N. J., Antar, G. M., DeBolt, L., Gutierrez, K., Hendriks, K. P., Hoewener, A., Hu, A-Q., Joyce, E. M., Kikuchi, I. A. B. S., Larridon, I., Larson, D. A., de Lírio, E. J., Liu, J-X., Malakasi, P., Przelomska, N. A. S., Shah, T., Viruel, J., Allnutt, T. R., Ameka, G. K., Andrew, R. L., Appelhans, M. S., Arista, M., Ariza, M. J., Arroyo, J., Arthan, W., Bachelier, J. B., Bailey, C. D., Barnes, H. F., Barrett, M. D., Barrett, R. L., Bayer, R. J., Bayly, M. J., Biffin, E., Biggs, N., Birch, J. L., Bogarín, D., Borosova, R., Bowles, A. M. C., Boyce, P. C., Bramley, G. L. C., Briggs, M., Broadhurst, L., Brown, G. K., Bruhl, J. J., Bruneau, A., Buerki, S., Burns, E., Byrne, M., Cable, S., Calladine, A., Callmander, M. W., Cano, Á., Cantrill, D. J., Cardinal-McTeague, W. M., Carlsen, M. M., Carruthers, A. J. A., de Castro Mateo, A., Chase, M. W., Chatrou, L. W., Cheek, M., Chen, S., Christenhusz, M. J. M., Christin, P-A., Clements, M. A., Coffey, S. C., Conran, J. G., Cornejo, X., Couvreur, T. L. P., Cowie, I. D., Csiba, L., Darbyshire, I., Davidse, G., Davies, N. M. J., Davis, A. P., van Dijk, K., Downie, S. R., Duretto, M. F., Duvall, M. R., Edwards, S. L., Eggli, U., Erkens, R. H. J., Escudero, M., de la Estrella, M., Fabriani, F., Fay, M. F., Ferreira, P. D. L., Ficinski, S. Z., Fowler, R. M., Frisby, S., Fu, L., Fulcher, T., Galbany-Casals, M., Gardner, E. M., German, D. A., Giaretta, A., Gibernau, M., Gillespie, L. J., González, C. C., Goyder, D. J., Graham, S. W., Grall, A., Green, L., Gunn, B. F., Gutiérrez, D. G., Hackel, J., Haevermans, T., Haigh, A., Hall, J. C., Hall, T., Harrison, M. J., Hatt, S. A., Hidalgo, O., Hodkinson, T. R., Holmes, G. D., Hopkins, H. C. F., Jackson, C. J., James, S. A., Jobson, R. W., Kadereit, G., Kahandawala, I. M., Kainulainen, K., Kato, M., Kellogg, E. A., King, G. J., Klejevskaja, B., Klitgaard, B. B., Klopper, R. R., Knapp, S., Koch, M. A., Leebens-Mack, J. H., Lens, F., Leon, C. J., Léveillé-Bourret, É., Lewis, G. P., Li, D-Z., Li, L., Liede-Schumann, S., Livshultz, T., Lorence, D., Lu, M., Lu-Irving, P., Luber, J., Lucas, E. J., Luján, M., Lum, M., Macfarlane, T. D., Magdalena, C., Mansano, V. F., Masters, L. E., Mayo, S. J., McColl, K., McDonnell, A. J., McDougall, A. E., McLay, T. G. B., McPherson, H., Meneses, R. I., Merckx, V. S. F. T., Michelangeli, F. A., Mitchell, J. D., Monro, A. K., Moore, M. J., Mueller, T. L., Mummenhoff, K., Munzinger, J., Muriel, P., Murphy, D. J., Nargar, K., Nauheimer, L., Nge, F. J., Nyffeler, R., Orejuela, A., Ortiz, E. M., Palazzesi, L., Peixoto, A. L., Pell, S. K., Pellicer, J., Penneys, D. S., Perez-Escobar, O. A., Persson, C., Pignal, M., Pillon, Y., Pirani, J. R., Plunkett, G. M., Powell, R. F., Prance, G. T., Puglisi, C., Qin, M., Rabeler, R. K., Rees, P. E. J., Renner, M., Roalson, E. H., Rodda, M., Rogers, Z. S., Rokni, S., Rutishauser, R., de Salas, M. F., Schaefer, H., Schley, R. J., Schmidt-Lebuhn, A., Shapcott, A., Al-Shehbaz, I., Shepherd, K. A., Simmons, M. P., Simões, A. O., Simões, A. R. G., Siros, M., Smidt, E. C., Smith, J. F., Snow, N., Soltis, D. E., Soltis, P. S., Soreng, R. J., Sothers, C. A., Starr, J. R., Stevens, P. F., Straub, S. C. K., Struwe, L., Taylor, J. M., Telford, I. R. H., Thornhill, A. H., Tooth, I., Trias-Blasi, A., Udovicic, F., Utteridge, T. M. A., Del Valle, J. C., Verboom, G. A., Vonow, H. P., Vorontsova, M. S., de Vos, J. M., Al-Wattar, N., Waycott, M., Welker, C. A. D., White, A. J., Wieringa, J. J., Williamson, L. T., Wilson, T. C., Wong, S. Y., Woods, L. A., Woods, R., Worboys, S., Xanthos, M., Yang, Y., Zhang, Y-X., Zhou, M-Y., Zmarzty, S., Zuloaga, F. O., Antonelli, A., Bellot, S., Crayn, D. M., Grace, O. M., Kersey, P. J., Leitch, I. J., Sauquet, H., Smith, S. A., Eiserhardt, W. L., Forest, F. & Baker, W. J., 24 Apr 2024, (E-pub ahead of print) In: Nature. 629, p. 843-850 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
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    3 Downloads (Pure)
  • 2022

    A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

    Kim, J. T., Baker, W. J., Bailey, P., Barber, V., Barker, A., Bellot, S., Bishop, D., R Botigué, L., Brewer, G., Carruthers, T., Clarkson, J. J., Cook, J., Cowan, R. S., Dodsworth, S., Epitawalage, N., Françoso, E. & Gallego, B., 31 Mar 2022, In: Systematic Biology. 71, 2, p. 301-319 19 p., syab035.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    97 Downloads (Pure)
  • Taming the beast: a revised classification of Cortinariaceae based on genomic data

    Liimatainen, K., Kim, J. T., Pokorny, L., Kirk, P. M., Dentinger, B. & Niskanen, T., 23 Feb 2022, (E-pub ahead of print) In: Fungal Diversity. 112, 1, p. 89-170 82 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    32 Downloads (Pure)
  • 2021

    GAMUT: A Genomics Big Data Management Tool

    Ramakrishnan, E. P., Gupta, S., Gadhari, R., Bharti, N., Malviya, S., Manjari Kasibhatla, S., Kim, J. T. & Joshi, R., 8 Sept 2021, In: Journal do Biosciences. 46, 7 p., 89.

    Research output: Contribution to journalArticlepeer-review

  • 2020

    Quantifying Sustainability in a System of Coupled Tipping Elements

    Kim, J. T. & Polani, D., 18 Sept 2020, (Accepted/In press) Proceedings of the IEEE SSCI (IEEE SYMPOSIUM SERIES ON COMPUTATIONAL INTELLIGENCE). Institute of Electrical and Electronics Engineers (IEEE)

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2019

    Hyb-Seq for Flowering Plant Systematics

    Dodsworth, S., Pokorny, L., Johnson, M. G., Kim, J. T., Maurin, O., Wickett, N. J., Forest, F. & Baker, W. J., 30 Aug 2019, In: Trends in Plant Science. 24, 10, p. 887-891 5 p.

    Research output: Contribution to journalShort surveypeer-review

    24 Citations (Scopus)
  • 2018

    A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-medoids Clustering

    Johnson, M. G., Pokorny, L., Dodsworth, S., Botigué, L. R., Cowan, R. S., Devault, A., Eiserhardt, W. L., Epitawalage, N., Forest, F., Kim, J. T., Leebens-Mack, J. H., Leitch, I. J., Maurin, O., Soltis, D. E., Soltis, P. S., Wong, G. K-S., Baker, W. J. & Wickett, N. J., 10 Dec 2018, (E-pub ahead of print) In: Systematic Biology. 68, p. 594-606 13 p.

    Research output: Contribution to journalArticlepeer-review

    89 Citations (Scopus)
  • A Roadmap for Global Synthesis of the Plant Tree of Life

    Eiserhardt, W. L., Antonelli, A., Bennett, D. J., Botigué, L. R., Burleigh, J. G., Dodsworth, S., Enquist, B. J., Forest, F., Kim, J. T., Kozlov, A. M., Leitch, I. J., Maitner, B. S., Mirarab, S., Piel, W. H., Pérez-Escobar, O. A., Pokorny, L., Rahbek, C., Sandel, B., Smith, S. A., Stamatakis, A., & 3 othersVos, R. A., Warnow, T. & Baker, W. J., 30 Mar 2018, In: American Journal of Botany (AJB). 105, p. 1-9 9 p.

    Research output: Contribution to journalArticlepeer-review

    18 Citations (Scopus)
  • 2016

    Inter-Segment Complementarity in Orbiviruses: A Driver for Co-Ordinated Genome Packaging in the Reoviridae?

    Boyce, M., McCrae, M. A., Boyce, P. & Kim, J. T., 1 May 2016, In: Journal of General Virology. 97, p. 1145-1157 13 p.

    Research output: Contribution to journalArticlepeer-review

    16 Citations (Scopus)
  • Dosage Compensation in the African Malaria Mosquito Anopheles gambiae

    Rose, G., Krzywinska, E., Kim, J. T., Revuelta, L. & Krzywinski, J., 18 Jan 2016, In: Genome Biology and Evolution (GBE). 8, p. 411\425

    Research output: Contribution to journalArticlepeer-review

    24 Citations (Scopus)
  • 2015

    The Impact of Within-Herd Genetic Variation Upon Inferred Transmission Trees for Foot-and-Mouth Disease Virus

    Valdazo-González, B., Kim, J. T., Soubeyrand, S., Wadsworth, J., Knowles, N. J., Haydon, D. T. & King, D. P., 2015, In: Infection, Genetics and Evolution. 32, p. 440-448 9 p.

    Research output: Contribution to journalArticlepeer-review

    8 Citations (Scopus)
  • 2014

    NGS for Studying Viruses ``Beyond the Consensus''

    Kim, J. T., 2014, In: EMBnet.journal. 20, e774.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • 2012

    Computational Modelling of the Regulatory Network Organising the Wound Response in Arabidopsis thaliana

    Kim, J. T., Camargo, A., Devoto, A., Moulton, V. & Turner, J., 2012, In: Artificial life. 18, p. 445-460 16 p.

    Research output: Contribution to journalArticlepeer-review

  • DoGeNetS: Using Optimisation to Discriminate Regulatory Network Topologies Based on Gene Expression Data

    Camargo, A. V. & Kim, J. T., 2012, In: IEE Proceedings - Systems Biology. 6, p. 1-8 8 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Citations (Scopus)
  • Intelligent System for the Assessment of Crop Disorders

    Camargo, A., Molina, J. P., Cadena-Torres, J., Jimenez, N. & Kim, J. T., 2012, In: Computers and Electronics in Agriculture. 85, p. 1-7 7 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    6 Citations (Scopus)
  • 2009

    Exploring empowerment as a basis for quantifying sustainability

    Kim, J. T. & Polani, D., 2009, Procs IEEE Symposium on Artificial Life: ALife '09. Institute of Electrical and Electronics Engineers (IEEE), p. 21-28

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    File
    2 Citations (Scopus)
    32 Downloads (Pure)
  • 1999

    MADS-Box Genes Reveal That Gnetophytes Are More Closely Related to Conifers than to Flowering Plants

    Winter, K-U., Becker, A., Münster, T., Kim, J. T., Saedler, H. & Theißen, G., 1999, In: Proceedings of the National Academy of Sciences of the United States of America. 96, p. 7342-7347 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    251 Citations (Scopus)