TY - JOUR
T1 - Grid-based storage architecture for accelerating bioinformatics computing
AU - Wang, Frank
AU - Helian, Na
AU - Wu, Sining
AU - Deng, Yuhui
AU - Khare, Vineet
AU - Thompson, chris
PY - 2007/9
Y1 - 2007/9
N2 - This paper examines and investigates the relationship between bioinformatics data processing and its underlying computing architecture within the context of the International Nucleotide Sequence Database Collaboration (INSDC). INSDC exchanges sequence data on a daily basis across its three member organizations in USA, UK and Japan. We studied how this sequence database in MySQL can best take advantage of the increased transfer bandwidth of a grid-based storage architecture. Within the context of the UK Government Project “Grid-oriented Storage (GOS)” and the EC Project “EuroAsiaGrid,” GOS has been developed in our lab, which melds parallel streaming technique to meet the needs of WAN/Grid-based virtual organizations. A real-world test shows that the INSDC sequence database backuping operation, mysqldump, over the pipelined GOS architecture beats those over the classic …
AB - This paper examines and investigates the relationship between bioinformatics data processing and its underlying computing architecture within the context of the International Nucleotide Sequence Database Collaboration (INSDC). INSDC exchanges sequence data on a daily basis across its three member organizations in USA, UK and Japan. We studied how this sequence database in MySQL can best take advantage of the increased transfer bandwidth of a grid-based storage architecture. Within the context of the UK Government Project “Grid-oriented Storage (GOS)” and the EC Project “EuroAsiaGrid,” GOS has been developed in our lab, which melds parallel streaming technique to meet the needs of WAN/Grid-based virtual organizations. A real-world test shows that the INSDC sequence database backuping operation, mysqldump, over the pipelined GOS architecture beats those over the classic …
UR - https://link.springer.com/article/10.1007/s11265-007-0066-5
U2 - 10.1007/s11265-007-0066-5
DO - 10.1007/s11265-007-0066-5
M3 - Article
SN - 0922-5773
SP - 311
EP - 324
JO - The Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology
JF - The Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology
ER -