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ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression. / Parkinson, H.; Kapushesky, M.; Kolesnikov, N.; Rustici, G.; Shojatalab, M.; Abeygunawardena, N.; Berube, H.; Dylag, M.; Emam, I.; Farne, A.; Holloway, E.; Lukk, M.; Malone, J.; Mani, R.; Pilicheva, E.; Rayner, T.F.; Rezwan, F.; Sharma, A.; Williams, E.; Bradley, X.Z.; Adamusiak, T.; Brandizi, M.; Burdett, T.; Coulson, R.; Krestyaninova, M.; Kurnosov, P.; Maguire, E.; Neogi, S.G.; Rocca-Serra, P.; Sansone, S.A.; Sklyar, N.; Zhao, M.; Sarkans, U.; Brazma, A.

In: Nucleic Acids Research, Vol. 37, 2009.

Research output: Contribution to journalArticle

Harvard

Parkinson, H, Kapushesky, M, Kolesnikov, N, Rustici, G, Shojatalab, M, Abeygunawardena, N, Berube, H, Dylag, M, Emam, I, Farne, A, Holloway, E, Lukk, M, Malone, J, Mani, R, Pilicheva, E, Rayner, TF, Rezwan, F, Sharma, A, Williams, E, Bradley, XZ, Adamusiak, T, Brandizi, M, Burdett, T, Coulson, R, Krestyaninova, M, Kurnosov, P, Maguire, E, Neogi, SG, Rocca-Serra, P, Sansone, SA, Sklyar, N, Zhao, M, Sarkans, U & Brazma, A 2009, 'ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression', Nucleic Acids Research, vol. 37. https://doi.org/10.1093/nar/gkn889

APA

Parkinson, H., Kapushesky, M., Kolesnikov, N., Rustici, G., Shojatalab, M., Abeygunawardena, N., Berube, H., Dylag, M., Emam, I., Farne, A., Holloway, E., Lukk, M., Malone, J., Mani, R., Pilicheva, E., Rayner, T. F., Rezwan, F., Sharma, A., Williams, E., ... Brazma, A. (2009). ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Research, 37. https://doi.org/10.1093/nar/gkn889

Vancouver

Author

Parkinson, H. ; Kapushesky, M. ; Kolesnikov, N. ; Rustici, G. ; Shojatalab, M. ; Abeygunawardena, N. ; Berube, H. ; Dylag, M. ; Emam, I. ; Farne, A. ; Holloway, E. ; Lukk, M. ; Malone, J. ; Mani, R. ; Pilicheva, E. ; Rayner, T.F. ; Rezwan, F. ; Sharma, A. ; Williams, E. ; Bradley, X.Z. ; Adamusiak, T. ; Brandizi, M. ; Burdett, T. ; Coulson, R. ; Krestyaninova, M. ; Kurnosov, P. ; Maguire, E. ; Neogi, S.G. ; Rocca-Serra, P. ; Sansone, S.A. ; Sklyar, N. ; Zhao, M. ; Sarkans, U. ; Brazma, A. / ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression. In: Nucleic Acids Research. 2009 ; Vol. 37.

Bibtex

@article{e73aa39b8d90494facecc2f613d2e093,
title = "ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression",
abstract = "ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas—a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently—ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years.",
keywords = "public repository",
author = "H. Parkinson and M. Kapushesky and N. Kolesnikov and G. Rustici and M. Shojatalab and N. Abeygunawardena and H. Berube and M. Dylag and I. Emam and A. Farne and E. Holloway and M. Lukk and J. Malone and R. Mani and E. Pilicheva and T.F. Rayner and F. Rezwan and A. Sharma and E. Williams and X.Z. Bradley and T. Adamusiak and M. Brandizi and T. Burdett and R. Coulson and M. Krestyaninova and P. Kurnosov and E. Maguire and S.G. Neogi and P. Rocca-Serra and S.A. Sansone and N. Sklyar and M. Zhao and U. Sarkans and A. Brazma",
note = "Original article can be found at: http://nar.oxfordjournals.org/ Copyright the Author(s) DOI: 10.1093/nar/gkn889 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/UK/)which permits unrestricted non-commercial use, distribution and reproduction in any medium, provided the original work is properly cited.",
year = "2009",
doi = "10.1093/nar/gkn889",
language = "English",
volume = "37",
journal = "Nucleic Acids Research ",
issn = "0305-1048",
publisher = "Oxford University Press",

}

RIS

TY - JOUR

T1 - ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression

AU - Parkinson, H.

AU - Kapushesky, M.

AU - Kolesnikov, N.

AU - Rustici, G.

AU - Shojatalab, M.

AU - Abeygunawardena, N.

AU - Berube, H.

AU - Dylag, M.

AU - Emam, I.

AU - Farne, A.

AU - Holloway, E.

AU - Lukk, M.

AU - Malone, J.

AU - Mani, R.

AU - Pilicheva, E.

AU - Rayner, T.F.

AU - Rezwan, F.

AU - Sharma, A.

AU - Williams, E.

AU - Bradley, X.Z.

AU - Adamusiak, T.

AU - Brandizi, M.

AU - Burdett, T.

AU - Coulson, R.

AU - Krestyaninova, M.

AU - Kurnosov, P.

AU - Maguire, E.

AU - Neogi, S.G.

AU - Rocca-Serra, P.

AU - Sansone, S.A.

AU - Sklyar, N.

AU - Zhao, M.

AU - Sarkans, U.

AU - Brazma, A.

N1 - Original article can be found at: http://nar.oxfordjournals.org/ Copyright the Author(s) DOI: 10.1093/nar/gkn889 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/UK/)which permits unrestricted non-commercial use, distribution and reproduction in any medium, provided the original work is properly cited.

PY - 2009

Y1 - 2009

N2 - ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas—a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently—ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years.

AB - ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the ArrayExpress Repository—a public archive of functional genomics experiments and supporting data, the ArrayExpress Warehouse—a database of gene expression profiles and other bio-measurements and the ArrayExpress Atlas—a new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions. The Repository contains data from over 6000 experiments comprising approximately 200 000 assays, and the database doubles in size every 15 months. The majority of the data are array based, but other data types are included, most recently—ultra high-throughput sequencing transcriptomics and epigenetic data. The Warehouse and Atlas allow users to query for differentially expressed genes by gene names and properties, experimental conditions and sample properties, or a combination of both. In this update, we describe the ArrayExpress developments over the last two years.

KW - public repository

U2 - 10.1093/nar/gkn889

DO - 10.1093/nar/gkn889

M3 - Article

VL - 37

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

ER -